Occupancy Estimation and Modeling: Inferring Patterns and Dynamics of Species Occurrence
Average customer rating: 4 out of 5 stars
  • Great book for understanding site occupancy modeling
Occupancy Estimation and Modeling: Inferring Patterns and Dynamics of Species Occurrence
Darryl I. MacKenzie , James D. Nichols , J. Andrew Royle , Kenneth H. Pollock , Larissa L. Bailey , and James E. Hines
Manufacturer: Academic Press
ProductGroup: Book
Binding: Hardcover

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ASIN: 0120887665

Book Description

Occupancy Estimation and Modeling is the first book to examine the latest methods in analyzing presence/absence data surveys. Using four classes of models (single-species, single-season; single-species, multiple season; multiple-species, single-season; and multiple-species, multiple-season), the authors discuss the practical sampling situation, present a likelihood-based model enabling direct estimation of the occupancy-related parameters while allowing for imperfect detectability, and make recommendations for designing studies using these models.

* Provides authoritative insights into the latest in estimation modeling
* Discusses multiple models which lay the groundwork for future study designs
* Addresses critical issues of imperfect detectibility and its effects on estimation
* Explores the role of probability in estimating in detail

Customer Reviews:

4 out of 5 stars Great book for understanding site occupancy modeling.......2006-03-10

I think this is a pretty good book. It is the only reference on this relatively new type of patch occupancy modeling. It is mainly focused on the models of MacKenzie et al. and the Royle and Nichols model. This is a great place to start if you know nothing about this method or a good reference for advanced users.
This book does not fill the need of an introductory "how-to" book. If you want to know how to set up models and run them in program PRESENCE or MARK you will need to wait. Such a book does not exist. This is not a cookbook, but a compilation of the theory and an explanantion of the methodology behind occupancy estimation.
Individual-based Modeling and Ecology (Princeton Series in Theoretical and Computational Biology)
Average customer rating: 5 out of 5 stars
  • Thorough
Individual-based Modeling and Ecology (Princeton Series in Theoretical and Computational Biology)
Volker Grimm , and Steven F. Railsback
Manufacturer: Princeton University Press
ProductGroup: Book
Binding: Paperback

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  5. Dynamic Models in Biology Dynamic Models in Biology

ASIN: 069109666X

Book Description

Individual-based models are an exciting and widely used new tool for ecology. These computational models allow scientists to explore the mechanisms through which population and ecosystem ecology arises from how individuals interact with each other and their environment. This book provides the first in-depth treatment of individual-based modeling and its use to develop theoretical understanding of how ecological systems work, an approach the authors call "individual-based ecology."

Grimm and Railsback start with a general primer on modeling: how to design models that are as simple as possible while still allowing specific problems to be solved, and how to move efficiently through a cycle of pattern-oriented model design, implementation, and analysis. Next, they address the problems of theory and conceptual framework for individual-based ecology: What is "theory"? That is, how do we develop reusable models of how system dynamics arise from characteristics of individuals? What conceptual framework do we use when the classical differential equation framework no longer applies? An extensive review illustrates the ecological problems that have been addressed with individual-based models. The authors then identify how the mechanics of building and using individual-based models differ from those of traditional science, and provide guidance on formulating, programming, and analyzing models. This book will be helpful to ecologists interested in modeling, and to other scientists interested in agent-based modeling.

Customer Reviews:

5 out of 5 stars Thorough.......2007-09-10

I haven't finished the book, but so far it's been very thorough on the subject and has given me lots of ideas for how to proceed on the project I'm working on. Would definitely recommend it.
Essential Mathematical Biology
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    Essential Mathematical Biology
    Nicholas F. Britton
    Manufacturer: Springer
    ProductGroup: Book
    Binding: Paperback

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    ASIN: 185233536X

    Book Description

    Essential Mathematical Biology is a self-contained introduction to the fast-growing field of mathematical biology. Written for students with a mathematical background, it sets the subject in its historical context and then guides the reader towards questions of current research interest, providing a comprehensive overview of the field and a solid foundation for interdisciplinary research in the biological sciences.

    A broad range of topics is covered including: Population dynamics, Infectious diseases, Population genetics and evolution, Dispersal, Molecular and cellular biology, Pattern formation, and Cancer modelling.

    This book will appeal to 3rd and 4th year undergraduate students studying mathematical biology. A background in calculus and differential equations is assumed, although the main results required are collected in the appendices. A dedicated website at www.springer.co.uk/britton/ accompanies the book and provides further exercises, more detailed solutions to exercises in the book, and links to other useful sites.

    Dynamic Population Models (The Springer Series on Demographic Methods and Population Analysis)
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      Dynamic Population Models (The Springer Series on Demographic Methods and Population Analysis)
      Robert Schoen
      Manufacturer: Springer
      ProductGroup: Book
      Binding: Hardcover

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      ASIN: 1402052294

      Book Description

      Dynamic Population Models is the first book to comprehensively discuss and synthesize the emerging field of dynamic modeling, i.e. the analysis and application of population models that have changing vital rates. Incorporating the latest research, it includes thorough discussions of population growth and momentum under gradual fertility declines, the impact of changes in the timing of events on fertility measures, and the complex relationship between period and cohort measures. Recently developed models for the analysis of changing mortality are examined, and generalizations of Lotka’s fixed rate stable population model are developed and applied.

      The book is well organized and clearly written so that it is accessible to those with only a minimal knowledge of calculus. It begins with a review of fixed rate population models, from the basic life table to multistate stable populations. The process of convergence to stability is described, and the regularities underlying change in the size and composition of any population are explored. Techniques for estimating rates from multistate population distributions are presented, and new multi-age, multistate dynamic models are developed. Building on the logical closure of demographic models and the close relationship between population stocks and flows, the book sets forth the latest approaches for capturing population change in a world experiencing profound demographic transformations.

      Evolutionary Games and Population Dynamics
      Average customer rating: 5 out of 5 stars
      • The Best There Is On Evolutionary Dynamics
      Evolutionary Games and Population Dynamics
      Josef Hofbauer , and Karl Sigmund
      Manufacturer: Cambridge University Press
      ProductGroup: Book
      Binding: Paperback

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      ASIN: 052162570X

      Book Description

      Every form of behavior is shaped by trial and error. Such stepwise adaptation can occur through individual learning or through natural selection, the basis of evolution. Since the work of Maynard Smith and others, it has been realized how game theory can model this process. Evolutionary game theory replaces the static solutions of classical game theory by a dynamical approach centered not on the concept of rational players but on the population dynamics of behavioral programs. In this book the authors investigate the nonlinear dynamics of the self-regulation of social and economic behavior, and of the closely related interactions among species in ecological communities. Replicator equations describe how successful strategies spread and thereby create new conditions that can alter the basis of their success, i.e., to enable us to understand the strategic and genetic foundations of the endless chronicle of invasions and extinctions that punctuate evolution. In short, evolutionary game theory describes when to escalate a conflict, how to elicit cooperation, why to expect a balance of the sexes, and how to understand natural selection in mathematical terms.

      Customer Reviews:

      5 out of 5 stars The Best There Is On Evolutionary Dynamics.......2000-07-14

      When I was writing the chapter on evolutionary dynamics for my book Game Theory Evolving (Princeton, 2000), I looked at all the books available and found nothing. Then Hofbauer and Sigmund's new book (a totally revised version of their earlier Theory of Evolution and Dynamical Systems) came out, and I knew I had a masterpiece in hand.

      The book does not assume the reader knows basic differential equation theory--it presents all the theory necessary. Indeed, it is a wonderful way to learn differential equation theory, since one immediately is faced with meaningful problems to solve. It does assume the reader is familiar with multivariate calculus. The book should be accessible to biologists and game theorists with a minimum understanding of each other's disciplines.

      There are four parts. First, HS deal with Lotka-Volterra equations of the type prevalent in predator-prey models, which they extend to ecological models and several populations. Like the rest of the book, there are lots of problems and the presentation is elegant and succinct.

      The second part deals with game theory dynamics and replicator equations, including sections on evolutionary games and asymmetric games. This too is extremely nicely presented, and the links to the Lotka-Volterra models are made clear.

      Part three is on dynamical systems especially of relevance to biochemistry--catalytic hypercycles--as well as higher dimensional phase space dynamics of ecological models.

      Part four deal with population genetic models using a differential equation approach. This section is also excellent, though for serious readers it should be complemented by Karlin and Taylor's Second Course in Stochastic Processes (which is much more mathematically demanding).

      The physical production of the book is also first rate--a pleasure to read and use.
      Principles of Population Dynamics and Their Application
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        Principles of Population Dynamics and Their Application
        A A BERRYMAN
        Manufacturer: Garland Science
        ProductGroup: Book
        Binding: Paperback

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        ASIN: 0748740155

        Book Description

        Provides an introduction to population dynamics, exploring rules that govern change in any dynamic system and applying these general principles to populations of living organisms. The text is jargon-free and overcomes the controversy that surrounds this subject.

        Stochastic Population Dynamics in Ecology and Conservation (Oxford Series in Ecology and Evolution)
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          Stochastic Population Dynamics in Ecology and Conservation (Oxford Series in Ecology and Evolution)
          Russell Lande , Steinar Engen , and Bernt-Erik Saether
          Manufacturer: Oxford University Press, USA
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          Binding: Hardcover

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          ASIN: 0198525249

          Book Description

          All populations fluctuate stochastically, creating a risk of extinction that does not exist in deterministic models, with fundamental consequences for both pure and applied ecology. This book provides the most comprehensive introduction to stochastic population dynamics, combining classical background material with a variety of modern approaches, including new and previously unpublished results by the authors, illustrated with examples from bird and mammal populations, and insect communities.
          Dynamical Systems in Population Biology (CMS Books in Mathematics)
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            Dynamical Systems in Population Biology (CMS Books in Mathematics)
            Xiao-Qiang Zhao
            Manufacturer: Springer
            ProductGroup: Book
            Binding: Hardcover

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            ASIN: 0387003088

            Book Description

            The conjoining of nonlinear dynamics and biology has brought about significant advances in both areas, with nonlinear dynamics providing a tool for understanding biological phenomena and biology stimulating developments in the theory of dynamical systems. This research monograph provides an introduction to the theory of nonautonomous semiflows with applications to population dynamics. It develops dynamical system approaches to various evolutionary equations such as difference, ordinary, functional, and partial differential equations, and pays more attention to periodic and almost periodic phenomena. The presentation includes persistence theory, monotone dynamics, periodic and almost periodic semiflows, traveling waves, and global analysis of typical models in population biology. Research mathematicians working with nonlinear dynamics, particularly those interested in applications to biology, will find this book useful. It may also be used as a textbook or as supplementary reading for a graduate special topics course on the theory and applications of dynamical systems. Dr. Xiao-Qiang Zhao is a professor in applied mathematics at Memorial University of Newfoundland, Canada. His main research interests involve applied dynamical systems, nonlinear differential equations, and mathematical biology. He is the author of more than 40 papers and his research has played an important role in the development of the theory of periodic and almost periodic semiflows and their applications.
            Mathematical Models: Mechanical Vibrations, Population Dynamics, and Traffic Flow (Classics in Applied Mathematics)
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              Mathematical Models: Mechanical Vibrations, Population Dynamics, and Traffic Flow (Classics in Applied Mathematics)
              Richard Haberman
              Manufacturer: Society for Industrial Mathematics
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              Binding: Paperback

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              ASIN: 0898714087

              Book Description

              Mathematics is a grand subject in the way it can be applied to various problems in science and engineering. To use mathematics, one needs to understand the physical context. The author uses mathematical techniques along with observations and experiments to give an in-depth look at models for mechanical vibrations, population dynamics, and traffic flow. Equal emphasis is placed on the mathematical formulation of the problem and the interpretation of the results. In the sections on mechanical vibrations and population dynamics, the author emphasizes the nonlinear aspects of ordinary differential equations and develops the concepts of equilibrium solutions and their stability. He introduces phase plane methods for the nonlinear pendulum and for predator-prey and competing species models.
              Mathematical Modeling of Biological Systems, Volume I: Cellular Biophysics, Regulatory Networks, Development, Biomedicine, and Data Analysis (Modeling ... in Science, Engineering and Technology)
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                Mathematical Modeling of Biological Systems, Volume I: Cellular Biophysics, Regulatory Networks, Development, Biomedicine, and Data Analysis (Modeling ... in Science, Engineering and Technology)

                Manufacturer: Birkhäuser Boston
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                ASIN: 0817645578

                Book Description

                This two-volume, interdisciplinary work is a unified presentation of a broad range of state-of-the-art topics in the rapidly growing field of mathematical modeling in the biological sciences. Highlighted throughout both works are mathematical and computational approaches to examine central problems in the life sciences, ranging from the organizational principles of individual cells to the dynamics of large populations.

                Volume I covers a number of areas, including:

                * Cellular Biophysics

                * Regulatory Networks

                * Developmental Biology

                * Biomedical Applications

                * Data Analysis and Model Validation

                Volume II examines a diverse range of subjects, including:

                * Epidemiology

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                * Immunology

                * Neural Systems and the Brain

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                Both volumes will be excellent reference texts for a broad audience of researchers, practitioners, and advanced students in this rapidly growing field at the intersection of applied mathematics, experimental biology and medicine, computational biology, biochemistry, computer science, and physics.

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