Crystallography Made Crystal Clear, Third Edition : A Guide for Users of Macromolecular Models (Complementary Science)

Book Description

Crystallography Made Crystal Clear makes crystallography accessible to readers who have no prior knowledge of the field or its mathematical basis. This is the most comprehensive and concise reference for beginning Macromolecular crystallographers, written by a leading expert in the field. Rhodes' uses visual and geometric models to help readers understand the mathematics that form the basis of x-ray crystallography. He has invested a great deal of time and effort on World Wide Web tools for users of models, including beginning-level tutorials in molecular modeling on personal computers. Rhodes' personal CMCC Home Page also provides access to tools and links to resources discussed in the text. Most significantly, the final chapter introduces the reader to macromolecular modeling on personal computers-featuring SwissPdbViewer, a free, powerful modeling program now available for PC, Power Macintosh, and Unix computers. This updated and expanded new edition uses attractive four-color art, web tool access for further study, and concise language to explain the basis of X-ray crystallography, increasingly vital in today's research labs.

* Helps readers to understand where models come from, so they don't use them blindly and
inappropriately
* Provides many visual and geometric models for understanding a largely mathematical method
* Allows readers to judge whether recently published models are of sufficiently high quality and detail to be useful in their own work
* Allows readers to study macromolecular structure independently and in an open-ended fashion on their own computers, without being limited to textbook or journals illustrations
* Provides access to web tools in a format that will not go out of date. Links will be updated and added as existing resources change location or are added

Customer Reviews:

Crystal Clear.......2007-01-17

The delivery was prompt and in the item was in an excellent condition

Clear, but lack depth and practice problem.......2006-12-07

Crystallography Made Crystal Clear does clearly explain the principles of X-ray Crystallography. I used this book for a graduate class in introductory x-ray crystallography when I deemed that the assigned book for the class, Principles of Protein X-Ray Crystallography, unhelpful.

Crystallography Made Crystal Clear presents the theory behind crystallography in the most straightforward way possible. Whenever possible, concepts are explained in words and by examples instead of with equations. This elimates derivations that are not necessary to understand key concepts.

Although explanations in the book are clear, they are often too brief. The book also does not have any practice problems, which is a major drawback. If you are taking a crystallography class, I would take a look at this book but focus more heavily on the lecture notes and problems from class. Honestly, I haven't found a really good crystallography book, but this one at least is not too confusing.

Clear as a crystal!!!!.......2005-01-30

This book is a good one. Explains every aspect I always want to know about crystallography. In my first class of biochemistry I discover that I really like the macromolecular models, but my biochemistry book doesn't content much information about this subjet. When I discover this book I bought it, and read it, and I must to say that this book explain every aspect of the process of create a molecular model.
After read this book I thinking about to become a crystallographer.

The best introduction to the subject.......2004-06-15

This is the best introduction to crystallography I have ever come across. Which is quite an achievement, because its a difficult subject to understand. In crystallography, its very rare to find a book which does not deal with either a totally descriptive approach or a totally mathematical approach. Rhodes' book bridges the gap between the two and gives the reader the right dose of jargon and explanation. He illustrates every point with plenty of figures as well as real life computer models of proteins. Before I came across this book, I was struggling and failing to understand Isomorphous Replacement, MAD, Solvent Flattening, Maps and Models, as well as the iterative refining of models. I think no other book comes even close to this book in explaining all these concepts in simple format. This, I think is as clear as it can get without becoming oversimplified. A must have for all researchers and students whose work is even remotely connected to crystallography.

"The" clearest one out there...........2003-06-04

When it comes to this field of research, you get two types of references: (1) the 2-5 page quick intro that leaves you with the most basic overview of crystallography and (2) the 'hard core' books that go into such detail as to leave you breathless. This book is, in my opinion, the best transition book.

For non-crystallographers, this book will teach enough about crystallography to allow you to read crystal structure articles and understand what is meant by all of the used statistics and such.

For apprentice crystallographers, this is a wonderful intro into the field. Master the book, then move on to harder books to master it.

Book Description

This textbook gives a concise introduction to modern crystal structure determination, emphasising both its theoretical background and the way it is actually carried out. The theoretical sections are supported by many illustrations, and lay emphasis on a good understanding rather than rigorous mathematics. The most important data collection techniques, and the methods of data reduction, structure solution and refinement are discussed from a practical point of view. Many tips and insights help readers to recognise and avoid possible errors and traps, and to judge the quality of results. The second edition has been considerably updated, especially the chapter on experimental methods, which is now mainly concerned with modern data collection using area-detectors. From the reviews of the first edition: "The book provides a nice balance between describing the mathematical fundamentals and offering practical advice on how to solve a crystal structure… appropriate for an undergraduate audience (particularly in chemistry) and for graduate students or researchers who find they need a better grasp of the subject… a very helpful addition to the collection of introductory texts in X-ray crystallography. Especially for its treatment of common errors in the collection of intensity data and in the interpretation of results." Acta Crystallographica

Customer Reviews:

still uses Schonflies notation?!.......2007-06-24

For any physicist or chemist involved in finding the structure of a given crystal, this book gives a useful read. It treats the subject at a level suitable for a 3rd or 4th year undergrad, who has access to the various crystallographic equipment described in the book. Like a 3 circle goniometer, CCD collection system, and a computer for data reduction. The basic ideas often involve finding the reciprocal space of the latter, via the scattering.

There is not much quantum mechanical theory here. Much of the treatment involves classical scattering off the atoms in the crystal. A more sophisticated text would describe the QM. But it turns out that for finding structures, the book's level of analysis is quite adequate.

What could be a little surprising is that in the descriptions of the crystal classes, that Schonflies notation is also used, along with the standard international notation. In the early 80s, Schonflies notation was being phased out. Surprised to see it still in use.

The Book Doctors Recommend Most.......2005-08-14

This is the ideal book for the beginner and in my opinion a must-read. In the excellent translation by Robert O. Gould, "Crystal Structure Determination" by Werner Massa explains all the basics from symmetry in real and reciprocal space, over generation of X-rays and other practical aspects, all the way to structure solution and refinement. Massa keeps the book simple and understandable and uses mathematical formulae carefully and only when helpful or necessary.
I learned the basics of crystallography from the German original of "the Massa". Now that I am a teacher of crystallography myself, this is the book I recommend to my students.

Useful tool for all dealing with structure determination.......2001-09-12

Single crystal structure determination has become an important and extremely powerful tool not only for inorganic and structural chemists but for all kinds of chemists interested in the structures of their compounds. The major disadvantage of this method was hitherto the lack of useful introductions into it's practical use.
This gap has been filled by Massa's book.
It focuses - unlike other crystallography books - on the practical applications and enables the reader to attack own structural problems by himself. Additionally, this book will provide the necessary theoretical background to understand how X-ray diffraction works, how crystals are built, all this symmetry stuff and so on.
The absolute highlight is, however, the step-by-step explanation of a structure determination, where one can almost see the author sitting in front of his computer and struggling with one of his structures, explaining every step in detail.
Crystallography still needs heavy brain work sometimes. But this book won't cause unnecessary headaches as many other crystallography books do.
Therefore, I recommend this book warmly to my crystallography students.

Crystal Structure Determination.......2000-03-28

This review is important for me because I'm working in a Lab.

Principles of Protein X-Ray Crystallography

Average customer rating:

Depends on who you are and what you want...
Not Helpful for a introductory class
Decent text, but better Crystallography books are out there.
Best introductory text

Principles of Protein X-Ray Crystallography
Jan Drenth
Manufacturer: Springer
ProductGroup: Book
Binding: Hardcover

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Crystallography Made Crystal Clear, Third Edition : A Guide for Users of Macromolecular Models (Complementary Science)
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Accessories:

Phenolic Compound Biochemistry
Protein Interactions: Biophysical Approaches for the Study of Complex Reversible Systems (Protein Reviews)

ASIN: 0387333347

Book Description

X-ray crystallography has long been a vital method for studying the structure of proteins and other macromolecules. As the importance of proteins continues to grow, in fields from biochemistry and biophysics to pharmaceutical development and biotechnology, many researchers have found that a knowledge of X-ray diffraction is an indispensable tool. In this new edition of his essential work, Dr. Jan Drenth, recognized internationally for his numerous contributions to crystallographic research, has provided an up-to-date and technically rigorous introduction to the subject.

Principles of Protein X-ray Crystallography provides the theoretical background necessary to understand how the structure of proteins is determined at atomic resolution. It is intended to serve as an introduction for graduate students, postdoctoral researchers, and established scientists who want to use protein crystallography in their own endeavors, or need to understand the subject in order to critically evaluate the literature. New additions to the book include a section on twinning, an additional chapter on crystal growth and a discussion of single-wavelength anomalous dispersion (SAD).

About the Authors:

Dr. Jan Drenth is a professor emeritus at the Laboratory of Biophysical Chemistry at the University of Groningen, The Netherlands.

Contributing author Dr. Jeroen R. Mesters Ph.D. is a Senior Research Assistant at the Institute of Biochemistry, University of Luebeck, Germany.

Customer Reviews:

Depends on who you are and what you want..........2007-09-28

Jan Drenth is an old school protein crystallographer who has seen the evolution of the field right from its inception in the 1950s to the present day. He belongs to the era when Protein Crystallography was dominated by people with serious math and physics skills like Maurice Wilkins, Rosalind Franklin, Francis Crick, Max Perutz and John Kendrew. Owing to the lack of good computers in those days, all the calculations had to be done by hand and there was no way you could solve a protein structure if you didn't know what a Fourier Transform was. The situation is very different nowadays where, thanks to computers, even a person who doesn't know how to differentiate a function can solve protein structures.
Understandably, owing to the author's experiences and background, this book is an excellent one for people interested in the real math behind protein crystallography. It is much on the lines of the other classic book by Blundell and Johnson, also crystallographers belonging to the same era as Jan Drenth. It is quite full of mathematics and therefore, is not recommended for biologists or chemists with weak math skills. For such people I would recommend other introductory books on the subject written by Gale Rhodes, David Blow and Alex McPherson. A good approach would be to learn the basics from these intoductory books and 'graduate' to Drenth's book later.

Not Helpful for a introductory class.......2006-12-07

I used this text book for an introductory graduate class in X-ray Crystallograhy. After taking a semester of X-ray Crystallograhy (which is labeled as a Chemistry and Biochemistry course), I can say that the material is mainly based on physics and mathematics. I can't say that this text helped a great deal for my course. The text does not explain relevant points such as Miller indices, symmetry elements, or space groups clearly or in much depth. Instead, it spends too much time explaining concepts mathematically and deriving equations. It also does not contain any relevant practice problems, which are needed to understand Crystallography and practice for exams.

X-ray Crystallography is a very dense subject, and is not a course to take on a whim. I would not reccomend taking a course on Crystallography unless you have a really intense interest in pursuing research in that area. If you are interested in this area, do not buy this text even if it is required for your course. Take a look at Crystallography Made Crystal Clear by Gale Rhodes. That book is much clearer, though also lacks sufficient practice problems.

Decent text, but better Crystallography books are out there........2002-09-16

Drenth is a decent enough book. The figures are ok, nothing great. They mostly just drive home the point made in the text, but are not instructive in and upon themselves. If you are looking to get a basic understanding of X-Ray crystallography and its uses to solve protein structure try the Gale Rhodes book. If you are looking for a more rigorous book try the Michael M. Woolfson book. Drenth tries to be the middle ground between the two. The subject though is too complicated to do it justice like that. Either keep it simple or go in depth.

Best introductory text.......2001-04-17

Best introductory text for macromolecular xray crystallography. Simple and succinct mathematical explanation of basic concepts. It provides enough background for students to start a research project.

Crystal Structure Analysis: Principles and Practice (International Union of Crystallography Monographs on Crystallography)

Average customer rating:

A great introduction in crystal structure analysis

Crystal Structure Analysis: Principles and Practice (International Union of Crystallography Monographs on Crystallography)
Peter Main , Clegg William , Alexander J. Blake , and Robert O. Gould
Manufacturer: Oxford University Press, USA
ProductGroup: Book
Binding: Hardcover

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ASIN: 019850618X

Book Description

This text focuses on the practical aspects of crystal structure analysis, and provides the necessary conceptual framework for understanding and applying the technique. By choosing an approach that avoids undue emphasis on the mathematics involved, the book gives practical advice on topics such as growing crystals, solving and refining structures, and understanding and using the results. The technique described is a core experimental method in modern structural chemistry, and plays an ever more important role in the careers of final-year undergraduates, graduate students, postdoctoral and academic staff in chemistry.

Customer Reviews:

A great introduction in crystal structure analysis.......2004-01-29

This book should be one of the best introduction in crystal structure analysis for the beginners! Everybody wanting to start with x-ray structure analysis should read this book at the very beginning, since it's, in fact, a International Union of Crystallography Text on Crystallography. It covers the most important topics of x-ray structure analysis in an easy understandable language without boring the reader with mathematical details. You can get a good impression about what the basic principles and problems of x-crystallography are, and how they can be solved.

$Minerals and Rocks: Exercises in Crystal and Mineral Chemistry, Crystallography, X-ray Powder Diffraction, Mineral and Rock Identification, and Ore Mineralogy$
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Minerals and Rocks: Exercises in Crystal and Mineral Chemistry, Crystallography, X-ray Powder Diffraction, Mineral and Rock Identification, and Ore Mineralogy
Cornelis Klein
Manufacturer: Wiley
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Book Description

Features new chapters on crystal chemistry and mineral stability diagrams, more logical treatments of morphology and internal crystal structure along with extensively revised chapters on mineral chemistry and physical properties. Includes outstanding illustrations, hand specimen photographs and transmission electron microscope structure projects.

$Powder Diffraction: The Rietveld Method and the Two Stage Method to Determine and Refine Crystal Structures from Powder Diffraction Data$
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Powder Diffraction: The Rietveld Method and the Two Stage Method to Determine and Refine Crystal Structures from Powder Diffraction Data
Georg Will
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The Rietveld Method (International Union of Crystallography Monographs on Crystallography 5)

ASIN: 3540279857

Book Description

Crystal structure analysis from powder diffraction data has attracted considerable and ever growing interest in the last decades. X-ray powder diffraction is best known for phase analysis (Hanawalt files) dating back to the 30s. In the late 60s the inherent potential of powder diffraction for crystallographic problems was realized and scientists developed methods for using powder diffraction data at first only for the refinement of crystal structures. With the development of ever growing computer power profile fitting and pattern decomposition allowed to extract individual intensities from overlapping diffraction peaks opening the way to many other applications, especially to ab initio structure determination. Powder diffraction today is used in X-ray and neutron diffraction, where it is a powerful method in neutron diffraction for the determination of magnetic structures. In the last decade the interest has dramatically improved. There is hardly any field of crystallography where the Rietveld, or full pattern method has not been tried with quantitative phase analysis the most important recent application.

$X-ray diffraction in crystals, imperfect crystals, and amorphous bodies (A Series of books in physics)$
Average customer rating:

A must-have classic for X-ray diffractionists
A Classic.......

X-ray diffraction in crystals, imperfect crystals, and amorphous bodies (A Series of books in physics)
Andre Guinier
Manufacturer: W.H. Freeman
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Binding: Unknown Binding

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$X-Ray Diffraction$ X-Ray Diffraction
Introduction to Crystallography (Dover Classics of Science and Mathematics)
Elements of Modern X-ray Physics
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ASIN: B0006AXV0U

Book Description

Superb study begins with fundamentals of x-ray diffraction theory using Fourier transforms, then applies general results to various atomic structures, amorphous bodies, crystals and imperfect crystals. Elementary laws of x-ray diffraction on crystals follow as special case. Highly useful for solid-state physicists, metallographers, chemists, and biologists. 154 illustrations. 1963 edition.

Customer Reviews:

A must-have classic for X-ray diffractionists.......2005-08-14

To the curious minds of today and tomorrow:

This book is an advanced treatment of x-ray diffraction, which should adorn the bookshelves of x-ray diffractionists.

It is a pleasure to see that such a diffraction classic is very affordable, thanks to Dover Publications. It is a "best buy" indeed since it offers a lot of substance for its price.

The uninitiated reader in X-ray diffractometry should approach it with caution, however. It is by no means a textbook.

Those who have a well founded working knowledge in X-ray diffraction, on the other hand, may want to read this book because it elaborates the underlying principles with utmost rigour.

As such, I highly recommend this book.

Cheers,

Dr. E
---------------------------------------------

A Classic..............2000-06-12

Well...this book is definitely a "must have" book on diffraction if you're interested in this field. Dr. Guiner,for those who are not familiar with diffraction, was one of the leading scientist in the field and contributed much to the development of x-ray diffractometry. The book is definitely not for the beginner. However, for someone who has made his/her initial steps into the world of x-ray crystallography, this book might be rewarding to read for it discusses the fundamentals rigorously. The book is very affordable as well, making it a very attractive buy indeed...I highly recommend it.

Average customer rating:

Crystal Structure Analysis: A Primer
Jenny P. Glusker , and Kenneth N. Trueblood
Manufacturer: Oxford University Press, USA
ProductGroup: Book
Binding: Paperback

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ASIN: 0195035437

Book Description

This practical guide explains how and why the architecture of molecules can be determined by analysis of the diffraction patterns produced by X-ray crystallography. Thoroughly illustrated, it is intended for nonspecialists who want to understand the fundamentals of this widely used method of structure determination. The new second edition has been revised and expanded to take account of the many recent advances in the field.

Crystal Structure Determination (Oxford Chemistry Primers , No 60)

Average customer rating:

very good seller
great introduction

Crystal Structure Determination (Oxford Chemistry Primers , No 60)
William Clegg
Manufacturer: Oxford University Press, USA
ProductGroup: Book
Binding: Paperback

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$X-Ray Diffraction: In Crystals, Imperfect Crystals, and Amorphous Bodies$ X-Ray Diffraction: In Crystals, Imperfect Crystals, and Amorphous Bodies

ASIN: 0198559011

Book Description

This informative book explains the principles and practice of one of the most important methods of determining the structures of molecules, a subject of central interest in modern chemistry. It includes a set of case studies to illustrate how the method works. Mathematical treatment is kept at a relatively low level and is complemented by extensive graphical illustrations.

Customer Reviews:

very good seller.......2006-03-09

This guy is very kind and informative for purchasing item.
Good seller!!

great introduction.......2000-08-31

This book is one of the best introduction in crystal structure analysis that I have ever seen! Due to it's limited size (and price !!) it covers the most important topics of x-ray structure analysis in an easy understandable language without boring the reader with mathematical details. You really get a good impression about what the basic principles and problems of x-crystallography are, and how the can be solved. Everybody wanting to start with x-ray structure analysis should read this book at the very beginning.

$High Resolution X-Ray Diffractometry And Topography$
Average customer rating:

A review

High Resolution X-Ray Diffractometry And Topography
D.K. Bowen , and Brian K. Tanner
Manufacturer: CRC
ProductGroup: Book
Binding: Hardcover

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$X-Ray Diffraction: In Crystals, Imperfect Crystals, and Amorphous Bodies$ X-Ray Diffraction: In Crystals, Imperfect Crystals, and Amorphous Bodies

ASIN: 0850667585

Book Description

The study and application of electronic materials has created an increasing demand for sophisticated and reliable techniques for examining and characterizing these materials. This comprehensive book looks at the area of x-ray diffraction and the modern techniques available for deployment in research, development, and production. It provides the theoretical and practical background for applying these techniques in scientific and industrial materials characterization. The main aim of the book is to map the theoretical and practical background necessary to the study of single crystal materials by means of high-resolution x-ray diffraction and topography. It combines mathematical formalisms with graphical explanations and hands-on practical advice for interpreting data.

Customer Reviews:

A review.......2000-11-01

This is a new generation book. Most books available in the field cover the whole history of the X-ray scattering theories and applications. Then, specific applications that are very important in our days for industries and scientific researches are not properly treated. This book does begin where other related books have finished. The issues covered are not found anywhere else together, in a same volume, as they are here. It is fundamental to the new era of materials characterization.

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